Environnement de développement bioinformatique pour la génomique et la protéomique

Authors: Paladini, David
Advisor: Corbeil, Jacques; Rigault, Philippe
Abstract: The aim of this essay is to describe a development environement which is able to support bioinformaticians in several contexts for bioinformatics software development. This essay presents a development environement and substantiate its use in each context identified either by a software design or by a complete software realisation. Three development context of software infrastructure and bioinformatic software are identified : • Research project development. Setting up database for Leishmania parasite research project with cDNA microarray and development of a WEB application shed on light the polycistronic transcription of this parasite in graphical way. • Research plateform development. Evaluation of common facets of research platforms and design of a generic model for a laboratory information management system (LIMS). Evaluation of spécific facets of research platforms and development of support software for the qRT-PCR plateform. • Bioinformatic platform development. The first sample is a utility software for a high troughput data flow coming from the microarray platform. The second sample is a software making local alignments of nucleic acid sequences. This software which is based on BLAST, presents additional information in a more usable format for other software.
Document Type: Mémoire de maîtrise
Issue Date: 2006
Open Access Date: 12 April 2018
Permalink: http://hdl.handle.net/20.500.11794/18864
Grantor: Université Laval
Collection:Thèses et mémoires

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